Hotels in Mission Bay, San Diego

KAYAK searches hundreds of travel sites at once for hotels in Mission Bay

Here is why travellers choose KAYAK

Free to useThere are no hidden charges or fees.

Filter your dealsFilter by free cancellation, free breakfast and more.

Millions of reviewsCheck ratings based on millions of real guest reviews.

Bundle and saveSave money when you bundle your flight + hotel.

Recommended by KAYAK
Booking Insights
Recommended by KAYAK

Best hotels in Mission Bay (San Diego)

Most recommended Mission Bay hotels

Show all
Paradise Point Resort & Spa - San Diego - Bedroom
Paradise Point Resort & Spa
0.7 mi from Mission Bay, San Diego, United States
8.1Very Good(1879)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
1.2 mi from Mission Bay, San Diego, United States
7.6Good(2658)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
1.2 mi from Mission Bay, San Diego, United States
8.2Very Good(1570)
Parking
Free Wi-Fi
Pool
Pet-friendly
Catamaran Resort Hotel and Spa - San Diego - Restaurant
Catamaran Resort Hotel and Spa
1.8 mi from Mission Bay, San Diego, United States
8.2Very Good(670)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
1.9 mi from Mission Bay, San Diego, United States
8.7Very Good(1735)
Free Wi-Fi
Pool
Air conditioning
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
1.1 mi from Mission Bay, San Diego, United States
8.3Very Good(1738)
Pool
Pet-friendly
Air conditioning
San Diego Mission Bay Resort - San Diego - Restaurant
San Diego Mission Bay Resort
1.0 mi from Mission Bay, San Diego, United States
7.7Good(437)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Ith Mission Beach Backpacker Hostel - San Diego - Bedroom
Ith Mission Beach Backpacker Hostel
1.5 mi from Mission Bay, San Diego, United States
8.9Very Good(220)
Free Wi-Fi
The Boardwalk Hotel - San Diego - Living room
The Boardwalk Hotel
1.5 mi from Mission Bay, San Diego, United States
8.7Very Good(44)
Free Wi-Fi
Air conditioning
Mission Bay Condo - Steps to Sand, Dining, AC, Parking & Shops! - San Diego - Bedroom
Parking
Free Wi-Fi
Pet-friendly
Air conditioning
Beach-2-Bay 1br | Mission Beach | AC | Shops - San Diego - Living room
Beach-2-Bay 1br | Mission Beach | AC | Shops
1.5 mi from Mission Bay, San Diego, United States
8.8Very Good(27)
Air conditioning
Modern Beach Studio Condo - San Diego - Beach
Modern Beach Studio Condo
1.3 mi from Mission Bay, San Diego, United States
8.7Very Good(29)
Free Wi-Fi
Fun in the waves in the heart of Mission Beach! - San Diego - Patio
Fun in the waves in the heart of Mission Beach!
1.5 mi from Mission Bay, San Diego, United States
Steps To The Bay And The Ocean!! - San Diego - Living room
Steps To The Bay And The Ocean!!
1.4 mi from Mission Bay, San Diego, United States
8.7Very Good(14)
Free Wi-Fi
Mb Jamaica Flat - Steps 2 Mission Beach - San Diego
Mb Jamaica Flat - Steps 2 Mission Beach
1.5 mi from Mission Bay, San Diego, United States
Free Wi-Fi
Pet-friendly
South Shore 2 - San Diego
South Shore 2
1.7 mi from Mission Bay, San Diego, United States
Free Wi-Fi
Booking Insights

KAYAK’s insights for hotels in Mission Bay

Discover seasonal trends, ideal booking windows, and other data-driven tips to plan your stay in Mission Bay with confidence.

Which month has the cheapest hotel rates in Mission Bay?

Hotels are cheapest in Mission Bay in December, with average rates of £122. In comparison, August is the most expensive month, with prices at £414.

What is the cheapest day of the week to book a hotel in Mission Bay?

Tuesday offers the lowest rates in Mission Bay, with an average nightly price of £24. The highest prices are found on Wednesday, with average rates at £244.

How much is a hotel in Mission Bay for tonight?

The best deal for a 3-star hotel room in Mission Bay found by KAYAK users in the last 3 days was £100, while a 4-star hotel the lowest price was £158. The cheapest room found overall was for £136.

How much is a hotel in Mission Bay for this weekend?

The cheapest hotel room in Mission Bay for the upcoming weekend found on KAYAK in the last 3 days was for £121 per night. For the same dates, 3-star hotel rooms have been found for as low as £148 per night and 4-star hotel rooms from £176 per night.

How much is a Mission Bay hotel?

Here are our most popular & best value hotels

Good to know

Low season

High season

Average price (weeknight)

Average price (weekend night)

December
August
£177
£215
Cheapest month to stay with an average 42% drop in price.
Most expensive month to stay with an average 98% rise in price.
Average Sun - Thu price over the last 2 weeks.
Average Fri & Sat price over the last 2 weeks.

Top tips for finding a hotel deal in Mission Bay

  • If you’re looking for a cheap hotel in Mission Bay, you should consider going during the low season. You’ll generally find lower-priced hotels in Mission Bay in December and September.
  • If you’re looking for a bargain then KAYAK data shows that you’ll find the best hotel deals in Mission Bay (San Diego) if you stay on a Tuesday. On the other hand, the most expensive day for hotel bookings is Wednesday.
  • Not sure just how much there is to see and do in Mission Bay? KAYAK users usually book their hotel here for 4 days.

FAQs when booking a hotel in Mission Bay

  • What are the best hotels in Mission Bay?

    Mission Bay is a great part of San Diego to make your base. If you’re staying in Mission Bay area then Paradise Point Resort & Spa, Hyatt Regency Mission Bay Spa And Marina, and Bahia Resort Hotel are all recommended on KAYAK.

  • Which hotels in Mission Bay are romantic?

    If you’re looking for a romantic break with your partner in Mission Bay, then why not stay at The Wayfarer San Diego, Paradise Point Resort & Spa, or Bahia Resort Hotel, which have been recommended by KAYAK users as great for couples.

Where to stay in Mission Bay?

Our map will help you find the perfect hotel in Mission Bay, San Diego by showing you the exact location of each hotel.

What Mission Bay hotel guests are talking about

Show all

Popular topics

Hotels about topic

Show all
Bahia Resort Hotel - San Diego - Restaurant
Bahia Resort Hotel
1.2 mi from Mission Bay, San Diego, United States
8.2Very Good(1570)
Parking
Free Wi-Fi
Pool
Pet-friendly
The Dana on Mission Bay - San Diego - Building
The Dana on Mission Bay
1.1 mi from Mission Bay, San Diego, United States
8.3Very Good(1738)
Pool
Pet-friendly
Air conditioning
The Wayfarer San Diego - San Diego - Bedroom
The Wayfarer San Diego
1.9 mi from Mission Bay, San Diego, United States
8.7Very Good(1735)
Free Wi-Fi
Pool
Air conditioning
Hyatt Regency Mission Bay Spa And Marina - San Diego - Balcony
Hyatt Regency Mission Bay Spa And Marina
1.2 mi from Mission Bay, San Diego, United States
7.6Good(2658)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning
Catamaran Resort Hotel and Spa - San Diego - Restaurant
Catamaran Resort Hotel and Spa
1.8 mi from Mission Bay, San Diego, United States
8.2Very Good(670)
Free Wi-Fi
Pool
Pet-friendly
Air conditioning

Everything you need to know for your stay in San Diego

Not what you’re looking for? Find thousands of other hotels, flights, car hires and package deals with KAYAK.