£95 Find Cheap Flights from Manila to Japan – Compare and Save

This is the cheapest one-way flight price found by a KAYAK user in the last 72 hours by searching for a flight from Manila to Japan departing on 7/1. Fares are subject to change and may not be available on all flights or dates of travel. Click the price to replicate the search for this deal.
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Cheap Flights from Manila to Japan

Cheapest return prices found by our users on KAYAK in the last 72 hours
Tokyo
Tokyodirect£202
Fukuoka
Fukuokadirect£223
Tokyo
Tokyodirect£202
Fukuoka
Fukuokadirect£223

Book Cheap Manila to Japan Plane Tickets

 
Here are some of the best deals found on KAYAK recently from the most popular airlines for return flights from Manila to Japan that are departing in the next months. While these flights were available on KAYAK in the last 72 hours, prices and availability are subject to change and deals may expire.
Discover the best prices for you by selecting your travel dates on KAYAK.

Recent return flight deals from Manila to Japan

Wed, 16 Sep - Wed, 23 Sep
Jetstar Japan Logo
00:40 - 06:10
MNL
-
NRT
4h 30mdirect
Jetstar Japan Logo
19:40 - 23:40
NRT
-
MNL
5h 00mdirect
£202Jetstar Japan
Wed, 9 Sep - Sat, 12 Sep
Jetstar Japan Logo
00:40 - 06:10
MNL
-
NRT
4h 30mdirect
Jetstar Japan Logo
19:40 - 23:40
NRT
-
MNL
5h 00mdirect
£205Jetstar Japan
Fri, 8 Jan - Sun, 10 Jan
Cebu Pacific Logo
23:25 - 10:40
MNL
-
NRT
10h 15m
1 stop
Cebu Pacific Logo
19:15 - 23:35
NRT
-
MNL
5h 20mdirect
£213Cebu Pacific
Tue, 3 Nov - Fri, 6 Nov
Cebu Pacific Logo
06:40 - 12:25
MNL
-
NRT
4h 45mdirect
Cebu Pacific Logo
19:15 - 23:35
NRT
-
MNL
5h 20mdirect
£215Cebu Pacific
Sat, 12 Sep - Sun, 13 Sep
Philippine Airlines Logo
14:50 - 20:20
MNL
-
NRT
4h 30mdirect
Philippine Airlines Logo
09:15 - 13:05
NRT
-
MNL
4h 50mdirect
£215Philippine Airlines
Mon, 2 Nov - Fri, 6 Nov
Philippine Airlines Logo
03:00 - 08:00
MNL
-
NRT
4h 00mdirect
Philippine Airlines Logo
21:35 - 02:00
NRT
-
MNL
5h 25mdirect
£217Philippine Airlines
Tue, 3 Nov - Fri, 6 Nov
Multiple Airlines Logo
06:40 - 12:25
MNL
-
NRT
4h 45mdirect
Multiple Airlines Logo
22:05 - 05:45
NRT
-
MNL
8h 40m
1 stop
£233Multiple Airlines
Thu, 17 Sep - Thu, 24 Sep
Cathay Pacific Logo
12:30 - 21:35
MNL
-
HND
8h 05m
1 stop
Cathay Pacific Logo
16:20 - 00:15
HND
-
MNL
8h 55m
1 stop
£240Cathay Pacific
Mon, 7 Sep - Wed, 9 Sep
Cathay Pacific Logo
12:30 - 21:35
MNL
-
HND
8h 05m
1 stop
Cathay Pacific Logo
10:05 - 19:05
HND
-
MNL
10h 00m
1 stop
£240Cathay Pacific
Wed, 30 Sep - Wed, 7 Oct
Multiple Airlines Logo
12:15 - 18:00
MNL
-
NRT
4h 45mdirect
Multiple Airlines Logo
19:40 - 23:40
NRT
-
MNL
5h 00mdirect
£244Multiple Airlines
Booking Insights

KAYAK's insights & trends for Manila to Japan flights

Get data-powered insights and trends into flights from Manila to Japan to help you find the cheapest flights, the best time to fly and much more.

What is the cheapest Manila to Japan flight route?

Data is based on round-trip flight searches on KAYAK over the past month.

The cheapest ticket to Japan from Manila found in the last 5 days was to Osaka, at £128 return. The most popular route is from Manila (MNL) to Tokyo Narita Airport (NRT), and the cheapest return airline ticket found on this route in the last 5 days was £128.

What is the cheapest time of day to fly to Japan?

The average price for all round-trip flights from Manila to Japan depending on the time of departure, clicked by users on KAYAK in the last 2 weeks.

The cheapest time of day to fly to Japan is generally at night, when retur flights cost £184 on average. The most expensive time of day to fly to Japan is generally in the afternoon, which is peak travel time and where the average cost of a ticket is £293.

Can I save money by flying with a stopover from Manila to Japan?

The average return price for all direct flights, flights with one stopover, and flights with two stopovers for the route found by users searching on KAYAK in the last 2 weeks.

No, with an average price for the route of £244, prices are generally cheapest when you fly direct.

What is the cheapest month to fly from Manila to Japan?

To calculate monthly average prices, KAYAK takes all prices for each month over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the median of all values for each month.

The cheapest month for flights from Manila to Japan is September, when tickets cost £168 (return) on average. On the other hand, the most expensive months are December and June, when the average cost of return tickets is £281 and £223 respectively.

What’s the cheapest day of the week to fly from Manila to Japan?

The average price of all round-trip flights from Manila to Japan clicked on KAYAK for each day over the last 12 months.

For Manila to Japan, Friday is the cheapest day to fly on average and Sunday is the most expensive. Flying from Japan back to Manila, the best deals are generally found on Saturday, with Wednesday being the most expensive.

How far in advance should I book a flight from Manila to Japan?

To calculate weekly average prices, KAYAK takes all prices for each week before departure over the last year for round-trip flights from Manila to Japan, removes the top 0.1% to account for outliers, and then takes the average of all the values for each week.

To get a below-average price on a flight from Manila to Japan, you should book around 5 weeks before departure, which saves you about 39% compared to booking last-minute. For the absolute cheapest price, our data suggests you should book 23 weeks before departure.

Good to know - Cheap tickets from Manila to Japan

Low season

August

Cheapest flight

£95
Best time to beat the crowds but there is an average 2% increase in price.
Most popular time to fly (27% more expensive on average)
Flight from Manila to Tokyo Narita Airport

Flights from Manila to Japan: the best tips from KAYAK users

Insights shared by verified travellers who flew the route from Manila to Japan 
Verified travelerFlew with ANA
MNL
-
HND
Mar 2026
Make sure you weigh your carry-on and personal items. It was our first time having these weighed . On our previous flights with other airlines, they didn't weigh the carry-on and personal items so we were really confused when they instructed us to weigh it and then flustered when we had to open our check-in luggage to put some items from our personal items to meet the weight requirements.
Verified travelerFlew with Japan Airlines
MNL
-
NRT
Mar 2025
Be sure which terminal you are arriving and departing in Manila.
HFlew with Cebu Pacific
MNL
-
CTS
Apr 2025
Japan immigration and customs log online for faster clearance
BessieFlew with ANA
MNL
-
NRT
Sept 2024
ANA and JAL are always better. I try to take the first flight in the middle of the week.
KevinFlew with Cebu Pacific
MNL
-
NRT
Sept 2024
Bring charging cord as the have ports on the plane. You have to buy water, so get it in the airport, as 3 bottles is the same price as 1 warm bottle on the plane.
Verified travelerFlew with ANA
MNL
-
HND
Feb 2024
Arriving at Terminal 3 at JFK was better than other terminals at JFK. The USA citizen immigration line was fast, the luggage arrived quickly and the spot to get uber ride was so organized .

FAQs - booking Japan flights

  • How does KAYAK find such low prices on flights from Manila to Japan?

    KAYAK is a travel search engine. That means we look across the web to find the best prices we can find for our users. With over 2 billion flight queries processed yearly, we are able to display a variety of prices and options on flights from Manila to Japan.

  • How does KAYAK's flight Price Forecast tool help me choose the right time to buy my flight ticket from Manila to Japan?

    KAYAK’s flight Price Forecast tool uses historical data to determine whether the price for a flight from Manila to Japan is likely to change within 7 days, so travellers know whether to wait or book now.

  • What is the Hacker Fare option on flights from Manila to Japan?

    Hacker Fares allow you to combine one-way tickets in order to save you money over a traditional return ticket. You could then fly from Manila to Japan with an airline and back with another airline.

  • What is KAYAK's "flexible dates" feature and why should I care when looking for a flight from Manila to Japan?

    Sometimes travel dates aren't set in stone. If your preferred travel dates have some wiggle room, flexible dates will show you all the options when flying from Manila to Japan up to 3 days before/after your preferred dates. You can then pick the flights that suit you best.

Top tips for finding a cheap flight from Manila to Japan

  • Looking for a cheap flight from Manila to Japan? 25% of our users found tickets from Manila to Japan for the following prices or less: Tokyo £78 one-way - £170 round-trip

Reviews of the top 5 airlines flying from Manila to Japan

 
Need help choosing which airline to fly with from Manila to Japan? KAYAK airline reviews give an overall score for each airline based on loads of factors, including comfort, boarding, in-flight entertainment and more, to make your decision easier. See airline scores according to verified KAYAK customer reviews.
7.6
Cathay PacificOverall score based on 1433 reviews
7.7Entertainment
7.9Boarding
7.3Food
7.5Comfort
8.1Crew
Airline reviews

More meal choice. There was only pork, beef and shrimp. I could not eat any of it and they had no alternatives

8.0 ExcellentAnonymous, Apr 2026
MNL - HKG
Read more Cathay Pacific reviews

More meal choice. There was only pork, beef and shrimp. I could not eat any of it and they had no alternatives

The only notable problem was bathroom facilities. Only one toilet for far too many people, and dirty nearly all the time. Both otherwise, Cathay Pacific is great. Wonderful staff everywhere.

I didn't see any flight attendants offer coffee or green tea. There was regular drink service but after a short meal was served didn't notice that happening.

The flight was just ok, but the vendor made it exceptio ally bard to manage my own reservation and would not give me access. The blocked all of the one time pins to come to their email address which caused me.to go through them eceryrime to get seats see rhe reservation and even get wheelchair access for my sick 71 year old uncle. They only xommunicates via a bot which gave me incorrect info. I thought this was Kayak and not underprivileged. They ruined his trip, did not get him aisle seats and made it impossible to purchase extra leg room. It was a horrible experience. He was taken to hospital on arrival only to find he had blood clots and pnemonia while trying to navigate the airport. This vendor is very irresponsible and the airline could not access his info.

Great entertainment system, the seat is a bit old style needs refurbishment

Boarding at the airport was not well managed. Otherwise, had a good flight sitting in the first row (which I paid for). Crew was pretty friendly, and flight was smooth.

Short staffs, I ask stewardess to bring me cognac twice during dinner but they didn't bring it!

Mediocre. Nothing special. Bad airline food Never received the food I requested Slow response from ground staff concerning my wheelchair. I was left at a holding area and had to walk the distance to the gate. In Hong Kong

My biggest complaint is the comfort and no good movies to choose from. My headphones didn't work either. 😔

Everything went smooth. All flights were on time No changing gates, . No changing flights . It was like a completely different airlines tha n the last time I used Cathay Pacific . The last flight, 2 months ago, I had before this one was from Philippines also . I got changed in Manila and was told it only added 2 hours onto my flight . My 20 hour return trip ended up being 30 hours return with a 10.0 hour layover in New York with no seats anywhere . Everyone was sleeping or sitting on the floor . Unlike the hotel I was given in Manila to wait for this flight home . I never thought I would use Cathay Pacific again . But I did and this time you were great! I should have complained about the flight and layover from Hell a couple months ago. Consider that I am complaining about that august/23 flight now . Thank you got the great flying experience on my way home from philippines .

Between being the only jetstar flight delayed to changing gates at the last moment and starting boarding late, jetstar dropped the ball on this one. we had to run for last train. Never again

The seats are very uncomfortable just was not a pleasant experience

my flight was cancelled an hour before departure and i have not received a refund yet.

A child behind me was kicking my seat and the cabin attendant noticed and kindly asked me if I’d like to switch to a different available seat. Really nice.

The flight crew was very nice. Had a bit of a hiccup on my end when I checked in flying from Tokyo to Sapporo but the staff was very helpful. Definitely enjoyed both flights.

The staff seemed nice. The plane is small and being tall you can experience discomfort

Flight stewards were sometimes short when passengers made requests at the same time. The requests were simple but a smile & a remark of "I'll get to you soon" instead of a curt & passing "Wait a minute." Flying is not cheap & good manners should be a given when taking care of people cramped in seats for longer than ten hours. The food tasted great but doesn't look appetizing. The mid-meal break food or merienda were great in the last two flights I was on.

It was amazing with great service. But the seating could have been better if there was ample arm rest areas

Flight attendants did very well, they were all friendly and very helpful .

Everything is ok except the manner of transporting the people that includes me on a wheelchair. That was my first time cuz I was suffering from “sciatica “ and couldn’t walk well. Upon arrival at LAX it took me almost 3 hrs to get out of the airport bcuz of these wheelchairs procedures. If only I can manage to walk I should have done so OMG. Other than that so far everything is ok. THANK YOU.

The check in staff were fantastic. So so helpful and nice.

Absolutely terrible. I will never fly that airline again. The problem was with the constant emails changing my seats, arrival/ departure times and the aircraft. The staff at the airports and onboard were great. Between making the appointment in May 2025 and my actual trip I had over 50 emails announcing changes. I was traveling with 3 other couples and they experienced the same thing.

Service was good but food needs maybe it’s just me Cause I am a foodservice supervisor more menu Sampling to get better quality when packed to be reheated . Vegetables are already dark and over cooked and breaded entrees are not the best choice I guess . All airlines meal service doesn’t appeal To me.Cause this trip I’ve used 4 different airlines and nothing good in all of them food wise. Thanks

They were two hours late!! Threw everything else planned off.

Uncomfortable seats for international flights. No usb charging yet they want you to use your device for entertainment. Very poor.

Terrible. Not to be trusted. I missed a flight from Manila due to 3+ hours in traffic to the airport. Customer service was rude and unhelpful. I booked a new flight. The cost was steep. And on my credit card online account, Cebu Pacific charged me for two tickets, yet I'm traveling alone, one person. They are impossible to reach and pathetic customer service. My credit card company is looking into it. NEVER, NEVER fly Cebu Pacific. They will rip you off. They don't care, they don't have to. Fly another airline in the Philippines.

Most passengers going to Dumaguete early are tourists who are some booked thier ferry online. Mine was wasted because of delays cause by waiting on runway before taking off and too long before they let us go down...I could still make it in time if they let us go down early. We are just there waiting to go down the plane for 10-15mins.

We were allowed to board early, seats were spacious and we arrived early.

I had excellent experienced flying with Cebu Pacific on my domestic flight. However, no food and beverage serve might be due to short travel time of 40 minutes.

flight cancelled.. booked through orbitz, yet orbitz won't handle refunds.. never use them again..

It arrived 18 minutes early. Attendant are good. For baording , they should improve especially carrying thru bus.

Super delayed. Delayed to get the bus, delayed to get off the bus, delayed to take off.

exceptionally good with the particular flight because no delay. hope that happens for every flight

Boarding had us in a tunnel with no AC for 15 minutes. Not planned well. And you have to pay for water, get at airport

Great it a good airline but no food or entertainment as it’s a airline

This flight was excellent in all ways if they could repeat it consistently they would grow immediately

Philippines AirAsia is never on-time flight, delayed 3 hours. Everything else was fine though.

Service it was good Lower airfare and discount for loyal customer

The flight was delayed by an hour . Traveling with 75 year old father was difficult and then when he asked for water he was asked to purchase :-) . Overall just an ok experience.

Premium seats should have legroom this one didn't have it. I had 2 free checked bag but I got charged for while it shows on my reservation

Terrible airline! This airline just ruined our family vacation due to a 12 hours delay as a result of their operational issues.

Over 6 hours delayed.. using philippine air fleet planes are beat up dirty and uncomfortable. Have been flying air asia for over 4 years from Manila to Tokyo and kansai as well as several local flights from Manila to Bacolod and Cebu.. 3 planes were down for maintenance and caused havoc.. need to invest in new fleet or seriously clean and upgrade the existing fleet. Will not be flying anymore until fixed. Several options out there now to choose from as air asia prices have skyrocketed.. no point in using them anymore . Severally upset passenger here. They can’t even manage the queuing of Zones for boarding as it’s a crab fest free for all now. No discipline and let the passengers in line to board just run into any lane possible.. and priority luggage?? Forget it I’ve paid for it for the last 6 flights and never got it first.. air asia has turned into a expensive joke.. use Cebu pacific or zip air now..

We had three flight delays before eventually taking off 3 hours late. Inflight service was very limited, but it was a relatively short flight. Luggage was delivered promptly.

Nice n easy ride but if they extent flight to El nido instead of Puerto Princesa so have not go go through 5 hrs of windy road

The check in process was horrible. We were not advised that a Visa was required. And during check in, we were told that it was only going to cost $8.00 but was actually $88.00. The female agent who checked me in last minute also gave me attitude and said to me, “galit ka pa ba?” Almost as if it were my fault thst I was frustrated. I work in the airline industry and work for a US carrier where we advise passengers if possible documents needed for travel. Not only was this female agents attitude rude and unprofessional, but she was acting as if she didn’t care about anything or whether or not I got in the flight. She kept insisting that “I wait for an email showing that my K-ETA was approved, but had I waited for an email, I would’ve missed my flight. I will never again fly on this carrier, even if they cost the cheapest, because my experience with the front line customer facing employees was horrible. Im also going to make sure I share this experience with family and friends via social media and word of mouth.

Everything you need to know for your flight from Manila to Japan

Information on your arrival and departure airports